Contents
Molecular Biology

Vol. 35, No. 6, 2001

Simultaneous English language translation of the journal is available from MAIK "Nauka / Interperiodica" (Russia). Distributed
worldwide by Kluwer Academic/Plenum Publishers. Molecular Biology ISSN 0026-8933.

Preface

Bioinformatics of Genome Regulation and Structure

N. A. Kolchanov p. 793

Transcription Regulation of Eukaryotic Genes: Description in the TRRDatabase

N. A. Kolchanov, O. A. Podkolodnaya, E. A. Ananko, E. V. Ignatieva,
N. L. Podkolodnyi, V. M. Merkulov, I. L. Stepanenko, M. A. Pozdnyakov,
O. E. Belova, D. A. Grigorovich, and A. N. Naumochkin p. 794  abstract

Locus Control Regions: Description in the LCR-TRRDatabase

O. A. Podkolodnaya, V. G. Levitsky, and N. L. Podkolodnyi p. 802  abstract

Computer System “Gene Discovery” to Search for Patterns
in Eukaryotic Regulatory Nucleotide Sequences

E. E. Vityaev, Yu. L. Orlov, O. V. Vishnevsky, A. S. Belenok, and N. A. Kolchanov p. 810  abstract

Comparative Analysis of Methods Recognizing Potential Transcription
Factor Binding Sites

M. A. Pozdnyakov, E. E. Vityaev, E. A. Ananko, E. V. Ignatieva,
O. A. Podkolodnaya, N. L. Podkolodnyi, S. V. Lavryushev, and N. A. Kolchanov p. 818  abstract

Computer Analysis and Recognition of Drosophila melanogaster Gene Promoters

V. G. Levitsky and A. V. Katokhin p. 826  abstract

Analysis and Recognition of Erythroid-Specific Gene Promoters
Basing on Degenerate Oligonucleotide Motifs

O. V. Vishnevsky and E. E. Vityaev p. 833  abstract

Algorithm of Regulatory Signal Recognition in DNA Sequences

L. V. Danilova, K. Yu. Gorbunov, M. S. Gelfand, and V. A. Lyubetskii p. 841  abstract

Sequence-Determined Conformational Changes Downstream
of the Promoter DNA on Transcription Complex Formation

I. S. Masulis, V. V. Chasov, E. G. Kostyanitsyna, Yu. A. Purtov, and O. N. Ozoline p. 849  abstract

Computer Analysis of Regulatory Signals in Bacterial Genomes. Fnr Binding Sites

A. V. Gerasimova, D. A. Rodionov, A. A. Mironov, and M. S. Gelfand p. 853  abstract

Study of Regulation of Long-Chain Fatty Acid Metabolism Using Computer Analysis
of Complete Bacterial Genomes

N. S. Sadovskaya, O. N. Laikova, A. A. Mironov, and M. S. Gelfand p. 862  abstract

Rapid Method for Identification of Interconnections between Functionally
and/or Evolutionarily Related Biological Sequences

V. D. Gusev, L. A. Nemytikova, and N. A. Chuzhanova p. 867  abstract

Evolution of MIR Elements Located in the Coding Regions of Human Genome

M. B. Chaley and E. V. Korotkov p. 874  abstract

Structural Organization of the Human Genome: Distribution of Nucleotides, Alu Repeats,
and Exons in Chromosomes 21 and 22

V. M. Blinov, S. I. Denisov, D. V. Saraev, D. V. Shvetsov, D. L. Uvarov,
N. Yu. Oparina, L. S. Sandakhchiev, and L. L. Kisselev p. 883  abstract

Computer System mRNA-FAST (mRNA Function, Activity, STructure)

A. V. Kochetov, D. A. Grigorovich, I. I. Titov, D. G. Vorob’ev, O. A. Sirnik,
O. V. Vishnevsky, A. Sarai, and N. A. Kolchanov p. 890  abstract

Parameters of in vitro Evolution of Proteins and Peptides

V. P. Valuev, D. A. Afonnikov, O. I. Petrenko, and D. A. Grigorovich p. 898  abstract

Analysis of Protein Structural Motifs in Terms of Sets
of Codes Representing Local Structures

J. An, H. Wako, and A. Sarai p. 905  abstract

Interference of Apoptosis and Heat Shock Response Gene Networks

I. L. Stepanenko p. 911  abstract

Generalized Chemokinetic Method for Gene Network Simulation

V. A. Likhoshvai, Yu. G. Matushkin, A. V. Ratushny, E. A. Ananko,
E. V. Ignatieva, and O. A. Podkolodnaya p. 919  abstract

Relationship between a Gene Network Graph and Qualitative Modes of Its Functioning

V. A. Likhoshvai, Yu. G. Matushkin, and S. I. Fadeev p. 926  abstract

Modeling of Actual Eukaryotic Control Gene Subnetworks Based on the Method
of Generalized Threshold Models

R. N. Tchuraev and A. V. Galimzyanov p. 933  abstract

Kinetic Modeling of Energy Metabolism and Superoxide Generation
in Hepatocyte Mitochondria

O. V. Demin, I. I. Goryanin, B. N. Kholodenko, and H. V. Westerhoff p. 940  abstract

Revealing Key Interactions in a Metabolic Network:
Model of Primary Phosphate Transport in Bacteria

I. I. Titov and H.-K. Schroeder p. 950  abstract

Spatial Registration of Data on in situ Gene Expression

E. M. Myasnikova, A. A. Samsonova, M. G. Samsonova, and D. Reinitz p. 955  abstract

A Review of the Internet Site “Practical Molecular Biology”

S. G. Georgieva, E. N. Nabirochkina, A. V. Soldatov, and A. N. Krasnov p. 961  abstract

Author Index to Volume 35, 2001 p. 965

Contents of Volume 35, 2001 p. 970

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