Contents
Biophysics
Vol. 51, Suppl. 1, 2006
The supplement is published only in English by Pleiades Publishing, Inc.
Distributed worldwide by Springer. Biophysics ISSN 0006-3509.
Analysis of the Nucleotide Context of Arabidopsis thaliana Mitochondrial mRNA Editing Sites
O. V. Vishnevsky, I. I. Titov, and Yu. M. Konstantinov p. 1 abstract
Pattern of Locally Positioned Dinucleotides Correlates with MicroRNA Abundance in Plants
I. V. Khomicheva, V. G. Levitsky, N. A. Omelyanchuk, S. A. Savinskaya, and N. A. Kolchanov p. 7 abstract
Correlation between the Contexts of the Translation Initiation Signal
and the N-Terminal Sequence of Arabidopsis, Yeast, Mouse, and Human Proteins
O. A. Volkova, S. E. Titov, and A. V. Kochetov p. 11 abstract
Translation of Some Chloroplast Genes Is Checked to Allow for Splicing and Editing
A. V. Seliverstov, O. A. Zverkov, and V. A. Lyubetsky p. 18 abstract
Solution of the Spatial Structure of Dimeric Transmembrane Domains
of Proteins by Heteronuclear NMR Spectroscopy and Molecular Modeling
P. E. Volynsky, E. V. Bocharov, D. E. Nolde, Ya. A. Vereschaga, M. L. Mayzel,
K. S. Mineev, E. A. Mineeva, Yu. E. Pustovalova, I. A. Gagnidze,
R. G. Efremov, and A. S. Arseniev p. 23 abstract
Modeling Context-Dependent Conformation Parameters of DNA Duplexes
Y. N. Vorobjev and D. Yu. Emelyanov p. 28 abstract
Corroboration of the Functional Role of the Additional Zinc Binding Site
in the G245C Mutant Form of the p53 Protein
E. S. Fomin and V. A. Ivanisenko p. 35 abstract
Evaluation of Direct Effects of Protein Ubiquitylation Using Computational Analysis
A. L. Chernorudskiy, A. S. Shorina, A. Garcia, and M. R. Gainullin p. 39 abstract
Simulation of Protein Misfolding Using a Lattice Model
A. Yu. Palyanov, I. I. Titov, S. F. Chekmarev, and M. Karplus p. 44 abstract
Prediction of the Changes in Thermodynamic Stability of Proteins
Caused by Single Amino Acid Substitutions
P. S. Demenkov, E. E. Aman, and V. A. Ivanisenko p. 49 abstract
Conformational Properties of Short Oligopeptides: Prediction of the Protein Chain Conformation
P. K. Vlasov, A. V. Vlasova, N. G. Esipova, and V. G. Tumanyan p. 54 abstract
Prediction of Contact Numbers of Amino Acid Residues
Using a Neural Network Regression Algorithm
D. A. Afonnikov, A. V. Morozov, and N. A. Kolchanov p. 56 abstract
Modeling of Asymmetric Gene Networks Functioning with Different Types of Regulation
V. P. Golubyatnikov, Yu. A. Gaidov, A. G. Kleshchev, and E. P. Volokitin p. 61 abstract
GREENCE Technology for In Silico Analysis of Gene Network Dynamics
in Individual Cells of a Clonal Population
A. V. Galimzyanov p. 66 abstract
Mathematical Modeling of the Reproduction of the Hepatitis C Virus Replicon in Cell Culture.
Simulation of the Action of Potential Therapeutics
K. D. Bezmaternykh, E. L. Mishchenko, A. V. Ratushny, V. A. Likhoshvai,
T. M. Khlebodarova, and V. A. Ivanisenko p. 70 abstract
A Systems Approach to Morphogenesis in Arabidopsis thaliana: I. AGNS Database
N. A. Omelyanchuk, V. V. Mironova, E. M. Zalevsky, I. S. Shamov, A. S. Poplavsky,
N. L. Podkolodny, D. K. Ponomaryov, S. V. Nikolaev, E. D. Mjolsness,
E. M. Meyerowitz, and N. A. Kolchanov p. 75 abstract
A Systems Approach to Morphogenesis in Arabidopsis thaliana:
II. Modeling the Regulation of Shoot Apical Meristem Structure
S. V. Nikolaev, S. I. Fadeev, A. V. Penenko, V. V. Lavrekha, V. V. Mironova,
N. A. Omelyanchuk, E. D. Mjolsness, and N. A. Kolchanov p. 83 abstract
A Cellular Automaton Model of Morphogenesis in Arabidopsis thaliana
I. R. Akberdin, E. A. Ozonov, V. V. Mironova, D. N. Gorpinchenko,
N. A. Omelyanchuk, V. A. Likhoshvai, and N. A. Kolchanov p. 91 abstract
Mathematical Modeling of Intracellular Membrane Transport:
Receptor-Mediated Endocytosis and Degradation of Low-Density Lipoproteins
A. V. Ratushny and V. A. Likhoshvai p. 95 abstract
Multidimensional Analysis and Functional Assignment of DNA-Microarray Transcription Profiles
of Genes Involved in Adipogenesis
A. V. Katokhin, V. M. Efimov, M. Sh. Badratinov, O. K. Kamneva, and V. A. Mordvinov p. 100 abstract
MOLKERN: A Library of Software Components for Molecular Modeling Programs
E. S. Fomin, N. A. Alemasov, A. S. Chirtsov, and A. E. Fomin p. 110 abstract
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