Assessment of Human Ig Repertoire Diversity after Cryopreservation and Restimulation of B Cells

Anastasia O. Smirnova a, Leyla A. Ovchinnikova a, Ilgar Z. Mamedov a, Tatiana V. Grigoreva a, Samir N. Khazeev a, Marina A. Akhmedova a, and Yakov A. Lomakin a, *

a Shemyakin–Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, 117997 Russia

* email: yasha.l@bk.ru

Received 23 April, 2025

Abstract— Cryopreservation of human B cells is widely employed in clinical and research applications. However, it is still commonly believed that only freshly isolated B cells should be analyzed to accurately evaluate, both quantitatively and qualitatively, the immunoglobulin (Ig) repertoire. In this study, we use next-generation sequencing to investigate how the Ig repertoire reshapes after cryopreservation of B cells, with special focus on the clonotype representation after freeze-thawing, either with and without subsequent restimulation. Our findings indicated that the Ig repertoire was preserved after cell freezing, which might encourage scientists to use cryopreserved, patient-derived B cells in the studies of Ig repertoire, as well as demonstrated potential clinical and experimental applications of monitoring the Ig repertoire of cryopreserved B cells.

Keywords: immunoglobulin repertoire, Ig, Ig-seq, BCR-seq, NGS, freeze-thaw, B cells, cryopreservation

DOI: 10.1134/S0006297925601327